skip to main content
article

Life science research and data management—what can they give each other?

Published: 01 June 2004 Publication History

Abstract

"Databases for the life sciences" is not really a newly emerging area in databases. The Nucleotide Sequence Database from the European Molecular Biology Laboratory (EMBL) has been operational at the European Bioinformatics Institute (EBI) since 1980. SWISS-PROT, the classical database containing protein information, was established in 1986. Today, there are over a thousand different life science databases with contents ranging from gene-property data for different organisms to brain image data for patients with neurological disorders.

References

[1]
V. Christophides, G. Karvounarakis, D. Plexousakis, M. Scholl, and S. Tourtounis. Optimizing taxonomic semantic web queries using labeling schemes. Web Semantics: Science, Services and Agents on the World Wide Web, 1(2):207--228, Feb. 2004.
[2]
C. M. M. Keet. Biological data and conceptual modelling methods. Journal of Conceptual Modeling, October 2003.
[3]
U. Leser and F. Naumann. Query planning with information quality bounds. In Proc. 5th International Conference on Flexible Query Answering Systems (FQAS), pages 85--94, 2000.
[4]
A. Motro and I. Rakov. Estimating the quality of databases. In Proc. 3rd International Conference on Flexible Query Answering Systems (FQAS), pages 298--307. Lecture Notes in Artificial Intelligence, vol. 1495, 1998.
[5]
F. Naumann. From databases to information systems - information quality makes the difference. In Proc. 6th International Conference on Information Quality (IQ), pages 244--260. MIT, 2001.
[6]
W. Ng. An extension of the relational data model to incorporate ordered domains. ACM Transactions on Database Systems, 26(3):344--383, September 2001.
[7]
R. Stevens, C. Goble, I. Horrocks, and S. Bechhofer. Building a bioinformatics ontology using OIL. IEEE Trans. on Information Technology in Biomedicine, 6(2):135--141, June 2002.

Cited By

View all
  • (2007)Building a disordered protein databaseProceedings of the eighteenth conference on Australasian database - Volume 6310.5555/1273730.1273747(151-159)Online publication date: 30-Mar-2007
  • (2006)Realization of biological data management by object deputy database systemTransactions on Computational Systems Biology V10.5555/2168332.2168337(49-67)Online publication date: 1-Jan-2006

Recommendations

Comments

Information & Contributors

Information

Published In

cover image ACM SIGMOD Record
ACM SIGMOD Record  Volume 33, Issue 2
June 2004
126 pages
ISSN:0163-5808
DOI:10.1145/1024694
Issue’s Table of Contents

Publisher

Association for Computing Machinery

New York, NY, United States

Publication History

Published: 01 June 2004
Published in SIGMOD Volume 33, Issue 2

Check for updates

Qualifiers

  • Article

Contributors

Other Metrics

Bibliometrics & Citations

Bibliometrics

Article Metrics

  • Downloads (Last 12 months)0
  • Downloads (Last 6 weeks)0
Reflects downloads up to 08 Mar 2025

Other Metrics

Citations

Cited By

View all
  • (2007)Building a disordered protein databaseProceedings of the eighteenth conference on Australasian database - Volume 6310.5555/1273730.1273747(151-159)Online publication date: 30-Mar-2007
  • (2006)Realization of biological data management by object deputy database systemTransactions on Computational Systems Biology V10.5555/2168332.2168337(49-67)Online publication date: 1-Jan-2006

View Options

Login options

View options

PDF

View or Download as a PDF file.

PDF

eReader

View online with eReader.

eReader

Figures

Tables

Media

Share

Share

Share this Publication link

Share on social media