Automated gene processing and exon sequence retrieval
Abstract
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References
[1]
Becker, W. M., Kleinsmith, L.J., and Hardin, J. (2003). The World of the Cell (5thed.). California: Pearson Education, Inc.
[2]
Benson D.A., Karsch-Mizrachi,I., Lipman,D.J., Ostell,J. and Wheeler,D.L. (2004) GenBank: update. Nucleic Acids Res., 32, D23--D26.
[3]
Critchlow, T. and Lacroix, Z. (2003). Bioinformatics Managing ScientificDatabases. New York: Kaufmann.
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- Automated gene processing and exon sequence retrieval
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Automated gene processing and exon sequence retrieval
ITICSE '06: Proceedings of the 11th annual SIGCSE conference on Innovation and technology in computer science educationA software system for gene sequence database construction based on fast approximate string matching
We propose a web-based software system for sequence acquisition and database construction. An example application of this system is to construct a ribosomal RNA gene (rDNA) sequence database to facilitate the study of microbial communities. A fast and ...
Complementary intron sequence motifs associated with human exon repetition: a role for intragenic, inter-transcript interactions in gene expression
Motivation: Exon repetition describes the presence of tandemly repeated exons in mRNA in the absence of duplications in the genome. The regulation of this process is not fully understood. We therefore investigated the entire flanking intronic ...
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Published In
June 2006390 pagesISBN:1595930558DOI:10.1145/1140124- Conference Chair:
- Renzo Davoli,
- Program Chairs:
- Michael Goldweber,
- Paola Salomoni
Copyright © 2006 ACM.
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Association for Computing Machinery
New York, NY, United States
Publication History
Published: 26 June 2006
Published in SIGCSE Volume 38, Issue 3
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