skip to main content
10.1145/1143997.1144002acmconferencesArticle/Chapter ViewAbstractPublication PagesgeccoConference Proceedingsconference-collections
Article

A new ant colony algorithm for multi-label classification with applications in bioinfomatics

Published:08 July 2006Publication History

ABSTRACT

The conventional classification task of data mining can be called single-label classification, since there is a single class attribute to be predicted. This paper addresses a more challenging version of the classification task, where there are two or more class attributes to be predicted. We propose a new ant colony algorithm for the multi-label classification task. The new algorithm, called MuLAM (Multi-Label Ant-Miner) is a major extension of Ant-Miner, the first ant colony algorithm for discovering classification rules. We report results comparing the performance of MuLAM with the performance of three other classification techniques, namely the very simple majority classifier, the original Ant-Miner algorithm and C5.0, a very popular rule induction algorithm. The experiments were performed using five bioinformatics datasets, involving the prediction of several kinds of protein function.

References

  1. Bonabeau, E. and Theraulaz, G. Swam Smarts, Scientific American, March 2000, pp. 54--56.]]Google ScholarGoogle Scholar
  2. Bonabeau, E., Dorigo, M. and Theraulaz, G. Swarm Intelligence: from natural to artificial systems, Oxford University Press, 1999.]] Google ScholarGoogle ScholarCross RefCross Ref
  3. Clare, A. and King, R. D. Knowledge discovery in multi-label phenotype data, Proc. PKDD-2001, LNAI 2168, pp. 42--53. Springer, 2001.]] Google ScholarGoogle ScholarDigital LibraryDigital Library
  4. Clark, P. and Niblett, T. The CN2 induction algorithm, Machine Learning, Vol. 3, pp 261--283, 1989.]] Google ScholarGoogle ScholarDigital LibraryDigital Library
  5. Deneubourag, J. L., Aron, S., Goss, S. and Pasteels, J. M. The self-organizing exploratory pattern of the Argentine ant, Journal of Insect Behaviour, 3: 159--168, 1990.]]Google ScholarGoogle ScholarCross RefCross Ref
  6. Dorigo, M., Caro, G. D. and Gambardella, L. M. Ant Algorithms for Discrete Optimization, Artificial Life, Vol 5, No.3, pp. 137--172, 1999.]] Google ScholarGoogle ScholarDigital LibraryDigital Library
  7. Freitas, A. A. Data Mining and Knowledge Discovery with Evolutionary Algorithms, Springer, 2002.]] Google ScholarGoogle ScholarDigital LibraryDigital Library
  8. Goss, S., Aron, S., Deneuborg, J. L. and Pasteels, J. M. Self-organized shortcuts in the Argentine Ant, Naturwissenschaften, 76:579--581, 1989.]]Google ScholarGoogle ScholarCross RefCross Ref
  9. Grassé, P. P. La théorie de la stigmergie: essai d'interprétation du comportement des termites constructeurs, Insectes Sociaux, 6: 41--81, 1959.]]Google ScholarGoogle ScholarCross RefCross Ref
  10. Karalic, A. and Pirnat, V. Significance level based classification with multiple trees, Informatica, 15(5), 1991.]]Google ScholarGoogle Scholar
  11. Kendall, M. G. Multivariate Analysis, Second Edition, Charles Griffin, High Wycombe, England, 1980.]]Google ScholarGoogle Scholar
  12. McCallum, A. K. Multi-Label Text Classification with a Mixture Model Trained by EM, AAAI 99 Workshop on Text Learning, 1999.]]Google ScholarGoogle Scholar
  13. Parpinelli, R. S., Lopes, H. S. and Freitas, A. A. Data Mining with an Ant Colony Optimization Algorithm, IEEE Trans. On Evolutionary Computation, 6(4), Aug 2002, pp. 321--332.]]Google ScholarGoogle ScholarDigital LibraryDigital Library
  14. Parpinelli, R. S., Lopes, H. S. and Freitas, A. A. An Ant Colony Algorithm for Classification Rule Discovery, In: Data Mining: a Heuristic Approach, pp. 191--208. Idea Group, 2002.]]Google ScholarGoogle Scholar
  15. Prosite, http://ca.expasy.org/prosite/ (visited 2005)]]Google ScholarGoogle Scholar
  16. Quinlan, J. R. C4.5: Programs for Machine Learning, Morgan Kaufmann, 1993.]] Google ScholarGoogle ScholarDigital LibraryDigital Library
  17. Schapire, R. and Singer, Y. BoosTexter: A boosting-based system for text categorization, Machine Learning, 39(2/3): 135--168, 2000.]] Google ScholarGoogle ScholarDigital LibraryDigital Library
  18. Suzuki, E., Gotoh, M. and Choki, Y. Bloomy Decision Tree for Multi-objective Classification, Proc. PKDD 2001, LNAI 2168, pp. 436--447, 2001.]] Google ScholarGoogle ScholarDigital LibraryDigital Library
  19. Uniprot database, http://www.unirpot.org (visited 2005)]]Google ScholarGoogle Scholar
  20. Witten, I. H. and Frank, E. Data Mining -- Practical Machine Learning Tools and Techniques, 2nd Ed. Morgan Kaufmann, 2005.]] Google ScholarGoogle ScholarDigital LibraryDigital Library

Index Terms

  1. A new ant colony algorithm for multi-label classification with applications in bioinfomatics

    Recommendations

    Comments

    Login options

    Check if you have access through your login credentials or your institution to get full access on this article.

    Sign in
    • Published in

      cover image ACM Conferences
      GECCO '06: Proceedings of the 8th annual conference on Genetic and evolutionary computation
      July 2006
      2004 pages
      ISBN:1595931864
      DOI:10.1145/1143997

      Copyright © 2006 ACM

      Permission to make digital or hard copies of all or part of this work for personal or classroom use is granted without fee provided that copies are not made or distributed for profit or commercial advantage and that copies bear this notice and the full citation on the first page. Copyrights for components of this work owned by others than ACM must be honored. Abstracting with credit is permitted. To copy otherwise, or republish, to post on servers or to redistribute to lists, requires prior specific permission and/or a fee. Request permissions from [email protected]

      Publisher

      Association for Computing Machinery

      New York, NY, United States

      Publication History

      • Published: 8 July 2006

      Permissions

      Request permissions about this article.

      Request Permissions

      Check for updates

      Qualifiers

      • Article

      Acceptance Rates

      GECCO '06 Paper Acceptance Rate205of446submissions,46%Overall Acceptance Rate1,669of4,410submissions,38%

      Upcoming Conference

      GECCO '24
      Genetic and Evolutionary Computation Conference
      July 14 - 18, 2024
      Melbourne , VIC , Australia

    PDF Format

    View or Download as a PDF file.

    PDF

    eReader

    View online with eReader.

    eReader