skip to main content
10.1145/2039370.2039422acmconferencesArticle/Chapter ViewAbstractPublication PagesesweekConference Proceedingsconference-collections
research-article

Digital microfluidic biochips: recent research and emerging challenges

Published:09 October 2011Publication History

ABSTRACT

Microfluidic biochips are replacing the conventional biochemical analyzers, and are able to integrate on-chip all the basic functions for biochemical analysis. The "digital" microfluidic biochips (DMFBs) are manipulating liquids not as a continuous flow, but as discrete droplets on a two-dimensional array of electrodes. Basic microfluidic operations, such as mixing and dilution, are performed on the array, by routing the corresponding droplets on a series of electrodes. The challenges facing biochips are similar to those faced by microelectronics some decades ago. To meet the challenges of increasing design complexity, computer-aided-design (CAD) tools are being developed for DMFBs. This paper provides an overview of DMFBs and describes emerging CAD tools for the automated synthesis and optimization of DMFB designs, from fluidic-level synthesis and chip-level design to testing. Design automations are expected to alleviate the burden of manual optimization of bioassays, time-consuming chip designs, and costly testing and maintenance procedures. With the assistance of CAD tools, users can concentrate on the development and abstraction of nanoscale bioassays while leaving chip optimization and implementation details to CAD tools.

References

  1. Advanced Liquid Logic, Inc., http://www.liquid-logic.com.Google ScholarGoogle Scholar
  2. Nanotechnology News, http://www.nanotech-now.com/.Google ScholarGoogle Scholar
  3. Microfluidic Lab., Duke University, http://microfluidics.ee.duke.edu/Google ScholarGoogle Scholar
  4. M. Alistar, E. Maftei, P. Pop, and J. Madsen, "Synthesis of biochemical applications on digital microfluidic biochips with operation variability," Proc. DTIP, pp. 350--357, 2010.Google ScholarGoogle Scholar
  5. C. J. Alpert, D. P. Mehta, S. S. Sapatnekar, "Handbook of Algorithms for Physical Design Automation," CRC Press, 2009. Google ScholarGoogle ScholarDigital LibraryDigital Library
  6. K. Chakrabarty, "Towards fault-tolerant digital microfluidic lab-on-chip: defects, fault modeling, testing, and reconfiguration," Proc. IEEE ICBCS, pp. 329--332, 2008.Google ScholarGoogle ScholarCross RefCross Ref
  7. K. Chakrabarty, "Design automation and test solutions for digital microfluidic biochips," IEEE Trans. CAS I, vol. 57, pp. 4--17, 2010. Google ScholarGoogle ScholarDigital LibraryDigital Library
  8. M. Cho and D. Z. Pan, "A high-performance droplet routing algorithm for digital microfluidic biochips," IEEE Trans. on CAD, vol. 27, no. 10, pp. 1714--1724, 2008. Google ScholarGoogle ScholarDigital LibraryDigital Library
  9. A. I. Drygiannakis, A. G. Papathanasiou, and A. G. Boudouvis, "On the connection between dielectric breakdown strength, trapping of charge, and contact angle saturation in electrowetting," ACS J. Langmuir, no. 25, pp. 147--152, 2009.Google ScholarGoogle ScholarCross RefCross Ref
  10. J. Gong and C. J. Kim, "Direct-referencing two-dimensional-array digital microfluidics using multilayer printed circuit board," IEEE J. MEMS, no. 2, pp. 257--264, 2008.Google ScholarGoogle ScholarCross RefCross Ref
  11. J. L. Gross, and J. Yellen, "Graph Theory and Its Application," CRC Press, FL, 1999. Google ScholarGoogle ScholarDigital LibraryDigital Library
  12. T.-Y. Ho, J. Zeng, and K. Chakrabarty, "Digital microfluidic biochips: A vision for functional diversity and more than Moore," Proc. IEEE/ACM ICCAD, pp. 578--585, 2010. Google ScholarGoogle ScholarDigital LibraryDigital Library
  13. T.-W. Huang and T.-Y. Ho, "A fast routability-and performance-driven droplet routing algorithm for digital microfluidic biochips," IEEE ICCD, pp. 445--450, 2009. Google ScholarGoogle ScholarDigital LibraryDigital Library
  14. T.-W. Huang, C.-H. Lin, and T.-Y. Ho, "A contamination aware droplet routing algorithm for digital microfluidic biochips," IEEE/ACM ICCAD, pp. 151--156, 2009.Google ScholarGoogle Scholar
  15. T.-W. Huang and T.-Y. Ho, "A two-stage ILP-based droplet routing for pin-constrained digital microfluidic biochips," Proc. ACM ISPD, pp. 201--208, 2010. Google ScholarGoogle ScholarDigital LibraryDigital Library
  16. T.-W. Huang, S.-Y. Yeh, and T.-Y. Ho, "A network-flow based pin-count aware routing algorithm for broadcast electrode-addressing EWOD chips," Proc. IEEE/ACM ICCAD, pp. 425--431, 2010. Google ScholarGoogle ScholarDigital LibraryDigital Library
  17. T.-W. Huang, H.-Y. Su, and T.-Y. Ho, "Progressive network-flow based power-aware broadcast addressing for pin-constrained digital microfluidic biochips," Proc. ACM/IEEE DAC, 2011. Google ScholarGoogle ScholarDigital LibraryDigital Library
  18. A. Kerber, F. Cartier, R. Degraeve, P. J. Roussel, L. Pantisano, T. Kauerauf, G. Groeseneken, H. E. Maes, and U. Schwalke, "Charge trapping and dielectric reliability of SiO2-Al2O3 gate stacks with TiN electrodes," IEEE Trans. on Electron Devices, no. 50, pp. 1261--1269, 2003.Google ScholarGoogle ScholarCross RefCross Ref
  19. K. Chakrabarty, R. B. Fair, and J. Zeng, "Design tools for digital microfluidic biochips: Towards functional diversification and more than Moore," IEEE Trans. on CAD, vol. 29, pp. 1001--1017, July 2010. Google ScholarGoogle ScholarDigital LibraryDigital Library
  20. C. C.-Y. Lin and Y.-W. Chang, "ILP-based pin-count aware design methodology for microfluidic biochips," Proc. ACM/IEEE DAC, pp. 258--263, 2009. Google ScholarGoogle ScholarDigital LibraryDigital Library
  21. C. C.-Y. Lin and Y.-W. Chang, "Cross-contamination aware design methodology for pin-constrained digital microfluidic biochips," Proc. ACM/IEEE DAC, 2010. Google ScholarGoogle ScholarDigital LibraryDigital Library
  22. Y.-Y. Lin, R. D. Evans, E. Welch, B. N. Hsu, A. C. Madison, and R. B. Fair, "Low Voltage Electrowetting-on-Dielectric Platform using Multi-Layer Insulators," Sensors and Actuators B: Chemical, pp. 465--470, 2010.Google ScholarGoogle ScholarCross RefCross Ref
  23. E. Maftei, P. Paul, and J. Madsen, "Tabu search-based synthesis of dynamically reconfigurable digital microfluidic biochips," ACM CASES, pp. 195--203, 2009. Google ScholarGoogle ScholarDigital LibraryDigital Library
  24. D. W. M. Marr and T. Munakata, "Micro/nanofluidic computing," Commun. ACM, vol. 50, pp. 64--68, 2007. Google ScholarGoogle ScholarDigital LibraryDigital Library
  25. M. G. Pollack, A. D. Shenderov, and R. B. Fair, "Electrowetting-based actuation of droplets for integrated microfluidics," LOC, pp. 96--101, 2002.Google ScholarGoogle Scholar
  26. M. Prakash and N. Gershenfeld, "Microfluidic bubble logic," Science, vol. 315, pp. 832--835, 2007.Google ScholarGoogle ScholarCross RefCross Ref
  27. Christian Ejdal Sjøgreen, "Synthesis of Biochemical Applications with Operation Variability on Digital Microfluidic Biochips," Bachelor Thesis, Technical University of Denmark, 2011.Google ScholarGoogle Scholar
  28. J. H. Song, R. Evans, Y. Y. Lin, B. N. Hsu, and R. B. Fair, "A scaling model for electrowetting-on-dielectric microfluidic actuators," Microfluidics and Nanofluidics, pp. 75--89, 2009.Google ScholarGoogle ScholarCross RefCross Ref
  29. F. Su and K. Chakrabarty, "Architectural-level synthesis of digital microfluidics-based biochips," Proc. IEEE/ACM ICCAD, pp. 223--228, 2004. Google ScholarGoogle ScholarDigital LibraryDigital Library
  30. F. Su and K. Chakrabarty, "Unified high-level synthesis and module placement for defect-tolerant microfluidic biochips," IEEE/ACM DAC, pp. 825--830, 2005. Google ScholarGoogle ScholarDigital LibraryDigital Library
  31. F. Su and K. Chakrabarty, "Reconfiguration techniques for digital microfluidic biochips," IEEE DTIP, pp. 143--148, 2005.Google ScholarGoogle Scholar
  32. F. Su, K. Chakrabarty, and R. B. Fair, "Microfluidics based biochips: Technology issues, implementation platforms, and design-automation challenges," IEEE Trans. on CAD, pp. 211--223, 2006. Google ScholarGoogle ScholarDigital LibraryDigital Library
  33. F. Su and K. Chakrabarty, "Module placement for fault-tolerant microfluidics-based biochips," ACM TODAES, vol. 11, pp. 682--710, 2006. Google ScholarGoogle ScholarDigital LibraryDigital Library
  34. F. Su, W. Hwang, and K. Chakrabarty, "Droplet routing in the synthesis of digital microfluidic biochips," IEEE/ACM DATE, pp. 1--6, 2006. Google ScholarGoogle ScholarDigital LibraryDigital Library
  35. F. Su, S. Ozev and K. Chakrabarty, "Ensuring the operational health of droplet-based microelectrofluidic biosensor systems", IEEE Sensors, vol. 5, pp. 763--773, 2005.Google ScholarGoogle ScholarCross RefCross Ref
  36. F. Su, S. Ozev and K. Chakrabarty, "Test planning and test resource optimization for droplet-based microfluidic systems", JETTA, vol. 22, pp. 199--210, 2006. Google ScholarGoogle ScholarDigital LibraryDigital Library
  37. F. Su, W. Hwang, A. Mukherjee and K. Chakrabarty, "Testing and diagnosis of realistic defects in digital microfluidic biochips", JETTA, vol. 23, pp. 219--233, 2007. Google ScholarGoogle ScholarDigital LibraryDigital Library
  38. H. J. J. Verheijen and M. W. J. Prins, "Reversible electrowetting and trapping of charge: model and experiments," ACS J. Langmuir, no. 15, pp. 6616--6620, 1999.Google ScholarGoogle ScholarCross RefCross Ref
  39. T. Xu and K. Chakrabarty, "Droplet-trace-based array partitioning and a pin assignment algorithm for the automated design of digital microfluidic biochips," Proc. CODES+ISSS, pp. 112--117, 2006. Google ScholarGoogle ScholarDigital LibraryDigital Library
  40. T. Xu and K. Chakrabarty, "Parallel scan-like test and multiple-defect diagnosis for digital microfluidic biochips", IEEE Trans. BioCAS, vol. 1, pp. 148--158, 2007.Google ScholarGoogle Scholar
  41. T. Xu and K. Chakrabarty, "Functional testing of digital microfluidic biochips", IEEE ITC, 2007.Google ScholarGoogle Scholar
  42. T. Xu and K. Chakrabarty, "Broadcast electrode-addressing for pin-constrained multi-functional digital microfluidic biochips," Proc. IEEE/ACM DAC, pp. 173--178, 2008. Google ScholarGoogle ScholarDigital LibraryDigital Library
  43. T. Xu, K. Chakrabarty and V. K. Pamula, "Defect-tolerant design and optimization of a digital microfluidic biochip for protein crystallization," IEEE Trans. on CAD, 2010. Google ScholarGoogle ScholarDigital LibraryDigital Library
  44. P.-H. Yuh, C.-L. Yang, and Y.-W. Chang, "Placement of defect-tolerant digital microfluidic biochips using the T-tree formulation," ACM JETC, vol. 3, no. 3, 2007. Google ScholarGoogle ScholarDigital LibraryDigital Library
  45. P.-H. Yuh, C.-L. Yang, and Y.-W. Chang, "BioRoute: A network flow based routing algorithm for the synthesis of digital microfluidic biochips," IEEE Trans. on CAD, vol. 27, no. 11, pp. 1928--1941, 2008. Google ScholarGoogle ScholarDigital LibraryDigital Library
  46. Y. Zhao and K. Chakrabarty, "Cross-contamination avoidance for droplet routing in digital micro fluidic biochips," IEEE/ACM DATE, pp. 1290--1295, 2009. Google ScholarGoogle ScholarDigital LibraryDigital Library
  47. Y. Zhao, T. Xu and K. Chakrabarty, "Control-path design and error recovery in digital microfluidic lab-on-chip," ACM JETC, vol. 3, No. 11, 2010. Google ScholarGoogle ScholarDigital LibraryDigital Library
  48. Y. Zhao, T. Xu and K. Chakrabarty, "Synchronization of washing operations with droplet routing for cross-contamination avoidance in digital microfluidic biochips," IEEE/DAC, pp. 635--640, 2010. Google ScholarGoogle ScholarDigital LibraryDigital Library
  49. Y. Zhao and K. Chakrabarty, "Co-optimization of droplet routing and pin assignment in disposable digital microfluidic biochips," Proc. ACM ISPD, pp. 69--76, 2011. Google ScholarGoogle ScholarDigital LibraryDigital Library
  50. Y. Zhao and K. Chakrabarty, "Digital microfluidic logic gates and their application to built-in self-test of lab-on-chip," IEEE Trans. BioCAS, vol. 4, pp. 250--262, August 2010.Google ScholarGoogle Scholar

Index Terms

  1. Digital microfluidic biochips: recent research and emerging challenges

                Recommendations

                Comments

                Login options

                Check if you have access through your login credentials or your institution to get full access on this article.

                Sign in
                • Published in

                  cover image ACM Conferences
                  CODES+ISSS '11: Proceedings of the seventh IEEE/ACM/IFIP international conference on Hardware/software codesign and system synthesis
                  October 2011
                  402 pages
                  ISBN:9781450307154
                  DOI:10.1145/2039370

                  Copyright © 2011 ACM

                  Permission to make digital or hard copies of all or part of this work for personal or classroom use is granted without fee provided that copies are not made or distributed for profit or commercial advantage and that copies bear this notice and the full citation on the first page. Copyrights for components of this work owned by others than ACM must be honored. Abstracting with credit is permitted. To copy otherwise, or republish, to post on servers or to redistribute to lists, requires prior specific permission and/or a fee. Request permissions from [email protected]

                  Publisher

                  Association for Computing Machinery

                  New York, NY, United States

                  Publication History

                  • Published: 9 October 2011

                  Permissions

                  Request permissions about this article.

                  Request Permissions

                  Check for updates

                  Qualifiers

                  • research-article

                  Acceptance Rates

                  Overall Acceptance Rate280of864submissions,32%

                  Upcoming Conference

                  ESWEEK '24
                  Twentieth Embedded Systems Week
                  September 29 - October 4, 2024
                  Raleigh , NC , USA

                PDF Format

                View or Download as a PDF file.

                PDF

                eReader

                View online with eReader.

                eReader